miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
24943089 NC_004367.1 Callitrichine herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17329 + 144045 90 19 -25.4 5' arm      3' arm
17332 + 145029 90 19 -25.4 5' arm      3' arm
17333 + 145357 90 19 -25.4 5' arm      3' arm
17325 + 142733 90 19 -25.4 5' arm      3' arm
17319 + 140765 90 19 -25.4 5' arm      3' arm
17328 + 143717 90 19 -25.4 5' arm      3' arm
17286 + 85200 88 19 -21.9 NP_733904 5' arm      3' arm
17324 + 142405 90 19 -25.4 5' arm      3' arm
17320 + 141093 90 19 -25.4 5' arm      3' arm
17280 + 53350 90 19 -27.6 NP_733880 5' arm      3' arm
17321 + 141421 90 19 -25.4 5' arm      3' arm
17323 + 142077 90 19 -25.4 5' arm      3' arm
17322 + 141749 90 19 -25.4 5' arm      3' arm
17272 + 20614 89 19 -24.3 NP_733860 5' arm      3' arm
17330 + 144373 90 19 -25.4 5' arm      3' arm
17331 + 144701 90 19 -25.4 5' arm      3' arm
17334 + 145685 90 19 -25.4 5' arm      3' arm
17327 + 143389 90 19 -25.4 5' arm      3' arm
17277 + 39912 88 19 -30 NP_733870 5' arm      3' arm
17326 + 143061 90 19 -25.4 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.