miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27312	+	94215	88	23.5	-19.4	YP_006578		5' arm      3' arm
27292	+	31838	87	21.5	-19.4	YP_006499		5' arm      3' arm
27290	+	17499	86	22	-19.7	YP_006480		5' arm      3' arm
27329	-	61698	88	20	-19.8			5' arm      3' arm
27295	+	34144	90	22.5	-19.8	YP_006500		5' arm      3' arm
27323	-	34233	90	22	-20	YP_006500		5' arm      3' arm
27325	-	36110	88	22.5	-20.1	YP_006502		5' arm      3' arm
27293	+	32595	88	22.5	-20.1	YP_006502		5' arm      3' arm
27294	+	33598	90	20.5	-20.3			5' arm      3' arm
27304	+	68191	87	25.5	-20.4	YP_006537		5' arm      3' arm
27289	+	15292	89	21	-20.4	YP_006479		5' arm      3' arm
27317	-	22771	88	20	-20.5	YP_006487		5' arm      3' arm
27302	+	57773	88	19	-20.7	YP_006526		5' arm      3' arm
27315	-	11639	90	19.5	-20.7	YP_006479		5' arm      3' arm
27288	+	11267	90	20.5	-21	YP_006479		5' arm      3' arm
27318	-	26330	83	20	-21.4	YP_006491		5' arm      3' arm
27327	-	48798	90	20.5	-21.6	YP_006515		5' arm      3' arm
27286	+	8312	90	24	-21.9			5' arm      3' arm
27307	+	74145	89	21	-21.9	YP_006545		5' arm      3' arm
27314	-	9693	89	21	-22			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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