miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27304	+	68191	87	25.5	-20.4	YP_006537		5' arm      3' arm
27305	+	69060	89	25	-23.5			5' arm      3' arm
27326	-	40848	86	25	-22.9	YP_006506		5' arm      3' arm
27331	-	94168	89	24.5	-32			5' arm      3' arm
27316	-	18808	90	24	-22.5	YP_006480		5' arm      3' arm
27286	+	8312	90	24	-21.9			5' arm      3' arm
27312	+	94215	88	23.5	-19.4	YP_006578		5' arm      3' arm
27311	+	94080	89	22.5	-28.3			5' arm      3' arm
27325	-	36110	88	22.5	-20.1	YP_006502		5' arm      3' arm
27308	+	79641	85	22.5	-25	YP_006554		5' arm      3' arm
27295	+	34144	90	22.5	-19.8	YP_006500		5' arm      3' arm
27293	+	32595	88	22.5	-20.1	YP_006502		5' arm      3' arm
27284	+	102	89	22.5	-29.6			5' arm      3' arm
27330	-	82563	87	22	-37.4	YP_006559		5' arm      3' arm
27300	+	48802	89	22	-22.3	YP_006515		5' arm      3' arm
27319	-	30683	88	22	-23.7	YP_006496		5' arm      3' arm
27323	-	34233	90	22	-20	YP_006500		5' arm      3' arm
27310	+	92589	89	22	-22.1	YP_006576		5' arm      3' arm
27306	+	70699	90	22	-22.4	YP_006541		5' arm      3' arm
27290	+	17499	86	22	-19.7	YP_006480		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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