miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26256 + 1860 89 22.5 -19.5 5' arm      3' arm
26322 + 44868 90 21 -23.6 5' arm      3' arm
26260 + 3471 88 21.5 -23 5' arm      3' arm
26326 + 47019 89 19 -28.1 5' arm      3' arm
26255 + 1481 90 19.5 -21.3 5' arm      3' arm
26259 + 2304 81 19 -21.2 5' arm      3' arm
26268 + 8617 88 22 -23.9 5' arm      3' arm
26336 - 3331 86 22.5 -28.6 5' arm      3' arm
26333 - 2565 90 20.5 -19.5 5' arm      3' arm
26335 - 3224 87 22 -24.8 5' arm      3' arm
26337 - 3675 90 21 -27.7 5' arm      3' arm
26272 + 12543 87 25 -27.2 5' arm      3' arm
26349 - 9921 88 23.5 -23.2 5' arm      3' arm
26257 + 2056 89 22 -23.8 NP_958243 5' arm      3' arm
26332 - 2046 90 19 -26.2 NP_958243 5' arm      3' arm
26258 + 2192 90 19.5 -23 NP_958243 5' arm      3' arm
26334 - 3004 90 19 -21.9 NP_958245 5' arm      3' arm
26338 - 4047 85 20.5 -26.2 NP_958246 5' arm      3' arm
26261 + 4845 90 21 -24.5 NP_958248 5' arm      3' arm
26339 - 4999 89 19 -29.7 NP_958248 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.