miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26346 - 7832 79 22.5 -28.7 NP_958252 5' arm      3' arm
26385 - 27503 90 19.5 -28.7 NP_958277 5' arm      3' arm
26336 - 3331 86 22.5 -28.6 5' arm      3' arm
26410 - 38213 90 19 -28.3 NP_958290 5' arm      3' arm
26304 + 37546 90 23 -28.3 NP_958289 5' arm      3' arm
26267 + 7937 89 21.5 -28.3 NP_958252 5' arm      3' arm
26327 + 48178 89 19 -28.2 NP_958299 5' arm      3' arm
26380 - 24831 87 19.5 -28.1 NP_958275 5' arm      3' arm
26326 + 47019 89 19 -28.1 5' arm      3' arm
26431 - 48433 90 20 -28 5' arm      3' arm
26403 - 34824 90 21.5 -27.9 NP_958289 5' arm      3' arm
26287 + 23929 90 19.5 -27.9 NP_958275 5' arm      3' arm
26357 - 15949 88 20 -27.7 NP_958264 5' arm      3' arm
26337 - 3675 90 21 -27.7 5' arm      3' arm
26419 - 41314 89 23.5 -27.5 5' arm      3' arm
26341 - 5765 89 23 -27.2 NP_958250 5' arm      3' arm
26272 + 12543 87 25 -27.2 5' arm      3' arm
26306 + 38081 87 20 -27.2 NP_958290 5' arm      3' arm
26281 + 22136 90 19.5 -27.2 NP_958272 5' arm      3' arm
26397 - 32321 88 21 -27.1 NP_958286 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.