miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
26319	+	42682	89	21.5	-20.9			5' arm      3' arm
26314	+	40289	89	20.5	-21	NP_958291		5' arm      3' arm
26347	-	8050	90	19.5	-21	NP_958252		5' arm      3' arm
26428	-	45702	90	22.5	-21	NP_958297		5' arm      3' arm
26253	+	437	90	19.5	-21	YP_115515		5' arm      3' arm
26399	-	32846	85	19.5	-21.1	NP_958287		5' arm      3' arm
26259	+	2304	81	19	-21.2			5' arm      3' arm
26409	-	37309	89	20	-21.2	NP_958289		5' arm      3' arm
26426	-	44824	90	20.5	-21.3	NP_958296		5' arm      3' arm
26255	+	1481	90	19.5	-21.3			5' arm      3' arm
26375	-	22977	89	19	-21.3	NP_958273		5' arm      3' arm
26293	+	28740	88	21	-21.3	NP_958279		5' arm      3' arm
26430	-	47563	88	20	-21.3			5' arm      3' arm
26294	+	29039	88	22.5	-21.3	NP_958280		5' arm      3' arm
26340	-	5653	89	20.5	-21.4	NP_958250		5' arm      3' arm
26303	+	37221	89	21	-21.4	NP_958289		5' arm      3' arm
26412	-	38878	89	19	-21.5	NP_958290		5' arm      3' arm
26390	-	28828	90	23	-21.5	NP_958279		5' arm      3' arm
26360	-	16667	82	20	-21.5	NP_958266		5' arm      3' arm
26283	+	22828	88	20.5	-21.6	NP_958273		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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