miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26361 - 17159 90 32.5 -36.9 NP_958266 5' arm      3' arm
26432 - 49011 88 22 -35.9 NP_958302 5' arm      3' arm
26355 - 15333 89 20 -34.7 5' arm      3' arm
26364 - 18131 87 21 -34.1 NP_958267 5' arm      3' arm
26292 + 28559 90 23 -34 NP_958279 5' arm      3' arm
26331 - 852 87 23 -32.9 YP_115515 5' arm      3' arm
26330 + 48903 89 20 -32.8 NP_958302 5' arm      3' arm
26320 + 44124 88 20.5 -32.7 NP_958295 5' arm      3' arm
26329 + 48796 89 21.5 -31.5 NP_958302 5' arm      3' arm
26274 + 15609 87 20 -31.4 5' arm      3' arm
26366 - 19425 89 20.5 -31.4 NP_958268 5' arm      3' arm
26277 + 16963 89 21.5 -31.2 NP_958266 5' arm      3' arm
26301 + 36955 90 23 -30.8 NP_958289 5' arm      3' arm
26356 - 15839 90 21.5 -30 NP_958264 5' arm      3' arm
26358 - 16046 90 20 -29.8 NP_958264 5' arm      3' arm
26339 - 4999 89 19 -29.7 NP_958248 5' arm      3' arm
26276 + 16391 90 20 -29.52 NP_958266 5' arm      3' arm
26398 - 32752 88 23 -29.5 NP_958287 5' arm      3' arm
26270 + 9374 90 20.5 -29.3 NP_958254 5' arm      3' arm
26291 + 27355 89 23.5 -29.3 NP_958277 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.