miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26427 - 45148 90 19 -22.1 NP_958297 5' arm      3' arm
26394 - 31125 89 19 -19.9 NP_958282 5' arm      3' arm
26289 + 25997 90 19 -26.1 NP_958276 5' arm      3' arm
26412 - 38878 89 19 -21.5 NP_958290 5' arm      3' arm
26302 + 37048 87 19 -21.6 NP_958289 5' arm      3' arm
26316 + 41116 87 19 -22.9 5' arm      3' arm
26263 + 6409 90 19 -23.3 NP_958251 5' arm      3' arm
26425 - 43879 90 19 -22.1 NP_958295 5' arm      3' arm
26286 + 23724 87 19 -26.1 NP_958274 5' arm      3' arm
26279 + 18665 89 19 -23.6 NP_958267 5' arm      3' arm
26410 - 38213 90 19 -28.3 NP_958290 5' arm      3' arm
26326 + 47019 89 19 -28.1 5' arm      3' arm
26327 + 48178 89 19 -28.2 NP_958299 5' arm      3' arm
26375 - 22977 89 19 -21.3 NP_958273 5' arm      3' arm
26372 - 21784 90 19 -23.9 5' arm      3' arm
26404 - 35568 87 19 -23.6 NP_958289 5' arm      3' arm
26379 - 24312 90 19 -24.5 NP_958275 5' arm      3' arm
26332 - 2046 90 19 -26.2 NP_958243 5' arm      3' arm
26418 - 41197 90 19 -23.4 5' arm      3' arm
26259 + 2304 81 19 -21.2 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.