miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26361 - 17159 90 32.5 -36.9 NP_958266 5' arm      3' arm
26272 + 12543 87 25 -27.2 5' arm      3' arm
26342 - 6063 89 24.5 -22.9 NP_958250 5' arm      3' arm
26393 - 30858 89 24.5 -24.2 NP_958282 5' arm      3' arm
26299 + 35063 90 24.5 -22.8 NP_958289 5' arm      3' arm
26309 + 38712 88 23.5 -25.4 NP_958290 5' arm      3' arm
26349 - 9921 88 23.5 -23.2 5' arm      3' arm
26419 - 41314 89 23.5 -27.5 5' arm      3' arm
26291 + 27355 89 23.5 -29.3 NP_958277 5' arm      3' arm
26411 - 38309 90 23 -22.5 NP_958290 5' arm      3' arm
26292 + 28559 90 23 -34 NP_958279 5' arm      3' arm
26420 - 41705 90 23 -26.1 NP_958292 5' arm      3' arm
26421 - 42169 90 23 -25.2 NP_958293 5' arm      3' arm
26423 - 42883 89 23 -22.6 NP_958294 5' arm      3' arm
26396 - 31941 90 23 -26.1 NP_958285 5' arm      3' arm
26304 + 37546 90 23 -28.3 NP_958289 5' arm      3' arm
26301 + 36955 90 23 -30.8 NP_958289 5' arm      3' arm
26390 - 28828 90 23 -21.5 NP_958279 5' arm      3' arm
26398 - 32752 88 23 -29.5 NP_958287 5' arm      3' arm
26386 - 27604 89 23 -24.9 NP_958277 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.