miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38229112 NC_005178.1 Bacteriophage D3112

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23170 - 37603 90 20 -22.3 5' arm      3' arm
23169 - 35773 87 23.5 -23.3 NP_938260 5' arm      3' arm
23168 - 35338 88 21.5 -28.3 NP_938260 5' arm      3' arm
23167 - 34889 86 22 -21.6 NP_938260 5' arm      3' arm
23166 - 34736 88 20 -20.6 NP_938260 5' arm      3' arm
23165 - 34524 90 22 -25.2 NP_938260 5' arm      3' arm
23164 - 32724 89 21.5 -22.3 NP_938257 5' arm      3' arm
23163 - 32393 84 19.5 -21.8 NP_938256 5' arm      3' arm
23162 - 32244 87 22 -21.1 NP_938256 5' arm      3' arm
23161 - 32110 90 22 -24.4 NP_938256 5' arm      3' arm
23160 - 31361 90 20 -22.5 NP_938256 5' arm      3' arm
23159 - 30870 90 20.5 -20.7 NP_938256 5' arm      3' arm
23158 - 30689 90 19.5 -29 NP_938255 5' arm      3' arm
23157 - 29327 89 20 -20.5 NP_938253 5' arm      3' arm
23156 - 29091 82 21.5 -29 NP_938253 5' arm      3' arm
23155 - 28688 85 20.5 -22.5 NP_938252 5' arm      3' arm
23154 - 27714 85 20.5 -28.7 NP_938252 5' arm      3' arm
23153 - 27549 90 20.5 -26.7 NP_938252 5' arm      3' arm
23152 - 27408 79 19 -21.3 NP_938252 5' arm      3' arm
23151 - 26773 90 19.5 -25.4 NP_938251 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.