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GenBank Identifier | RefSeq Acc. | Name |
38229112 | NC_005178.1 | Bacteriophage D3112 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23130 | - | 20776 | 86 | 22.5 | -37.2 | NP_938240 | 5' arm 3' arm | ||
23085 | - | 5481 | 90 | 21 | -34.2 | NP_938215 | 5' arm 3' arm | ||
23141 | - | 24090 | 90 | 20.5 | -31.5 | NP_938248 | 5' arm 3' arm | ||
23143 | - | 24631 | 89 | 25 | -30.9 | NP_938248 | 5' arm 3' arm | ||
23088 | - | 6216 | 84 | 21 | -30.3 | NP_938216 | 5' arm 3' arm | ||
23117 | - | 16908 | 90 | 21 | -30 | NP_938234 | 5' arm 3' arm | ||
23065 | + | 33885 | 88 | 23 | -29.2 | NP_938260 | 5' arm 3' arm | ||
23031 | + | 11381 | 89 | 23.5 | -29.2 | NP_938227 | 5' arm 3' arm | ||
23123 | - | 18881 | 90 | 23.5 | -29.2 | 5' arm 3' arm | |||
23112 | - | 15618 | 90 | 25 | -29.1 | NP_938234 | 5' arm 3' arm | ||
23095 | - | 8790 | 88 | 19 | -29.1 | NP_938222 | 5' arm 3' arm | ||
23142 | - | 24333 | 90 | 22 | -29.1 | NP_938248 | 5' arm 3' arm | ||
23121 | - | 18036 | 90 | 22.5 | -29 | NP_938235 | 5' arm 3' arm | ||
23158 | - | 30689 | 90 | 19.5 | -29 | NP_938255 | 5' arm 3' arm | ||
23156 | - | 29091 | 82 | 21.5 | -29 | NP_938253 | 5' arm 3' arm | ||
23126 | - | 19750 | 90 | 19.5 | -28.9 | 5' arm 3' arm | |||
23032 | + | 12924 | 90 | 21 | -28.7 | NP_938231 | 5' arm 3' arm | ||
23154 | - | 27714 | 85 | 20.5 | -28.7 | NP_938252 | 5' arm 3' arm | ||
23039 | + | 18792 | 90 | 20.5 | -28.6 | 5' arm 3' arm | |||
23058 | + | 31869 | 90 | 19.5 | -28.4 | NP_938256 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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