miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38229112 NC_005178.1 Bacteriophage D3112

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23104 - 12232 89 24.5 -19.4 NP_938229 5' arm      3' arm
23025 + 5233 82 20 -19.4 NP_938214 5' arm      3' arm
23060 + 32084 90 20 -19.5 NP_938256 5' arm      3' arm
23131 - 20959 89 23 -19.6 NP_938241 5' arm      3' arm
23102 - 11716 90 23 -19.6 NP_938228 5' arm      3' arm
23030 + 10439 81 20 -19.7 NP_938226 5' arm      3' arm
23122 - 18769 90 20 -19.7 NP_938236 5' arm      3' arm
23133 - 21242 90 22.5 -19.9 NP_938241 5' arm      3' arm
23043 + 23936 88 20 -20 NP_938248 5' arm      3' arm
23118 - 17019 90 21 -20 NP_938234 5' arm      3' arm
23027 + 6781 90 21 -20.2 NP_938217 5' arm      3' arm
23136 - 22187 90 19.5 -20.2 NP_938242 5' arm      3' arm
23114 - 16162 87 20 -20.3 NP_938234 5' arm      3' arm
23081 - 4370 89 24 -20.4 NP_938213 5' arm      3' arm
23157 - 29327 89 20 -20.5 NP_938253 5' arm      3' arm
23050 + 26164 87 22 -20.5 NP_938251 5' arm      3' arm
23166 - 34736 88 20 -20.6 NP_938260 5' arm      3' arm
23074 - 2399 90 19.5 -20.6 NP_938212 5' arm      3' arm
23087 - 5994 90 20.5 -20.6 NP_938215 5' arm      3' arm
23038 + 18135 90 24 -20.7 NP_938235 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.