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GenBank Identifier | RefSeq Acc. | Name |
38229112 | NC_005178.1 | Bacteriophage D3112 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23050 | + | 26164 | 87 | 22 | -20.5 | NP_938251 | 5' arm 3' arm | ||
23051 | + | 26684 | 90 | 19 | -26.6 | NP_938251 | 5' arm 3' arm | ||
23049 | + | 25848 | 88 | 21 | -24.9 | NP_938251 | 5' arm 3' arm | ||
23048 | + | 25144 | 90 | 20.5 | -23.9 | NP_938250 | 5' arm 3' arm | ||
23146 | - | 25270 | 89 | 21.5 | -21.5 | NP_938250 | 5' arm 3' arm | ||
23144 | - | 24763 | 90 | 19 | -25.1 | NP_938249 | 5' arm 3' arm | ||
23047 | + | 24967 | 87 | 20.5 | -23.4 | NP_938249 | 5' arm 3' arm | ||
23046 | + | 24680 | 80 | 19.5 | -26.4 | NP_938249 | 5' arm 3' arm | ||
23145 | - | 25170 | 89 | 24 | -23.1 | NP_938249 | 5' arm 3' arm | ||
23141 | - | 24090 | 90 | 20.5 | -31.5 | NP_938248 | 5' arm 3' arm | ||
23043 | + | 23936 | 88 | 20 | -20 | NP_938248 | 5' arm 3' arm | ||
23044 | + | 24413 | 90 | 19 | -25.2 | NP_938248 | 5' arm 3' arm | ||
23045 | + | 24553 | 87 | 19 | -23.4 | NP_938248 | 5' arm 3' arm | ||
23142 | - | 24333 | 90 | 22 | -29.1 | NP_938248 | 5' arm 3' arm | ||
23143 | - | 24631 | 89 | 25 | -30.9 | NP_938248 | 5' arm 3' arm | ||
23140 | - | 23825 | 90 | 21.5 | -21.8 | NP_938247 | 5' arm 3' arm | ||
23042 | + | 23487 | 90 | 20.5 | -22.3 | NP_938246 | 5' arm 3' arm | ||
23139 | - | 23189 | 85 | 20 | -22.4 | NP_938245 | 5' arm 3' arm | ||
23138 | - | 22819 | 88 | 22 | -27.2 | NP_938244 | 5' arm 3' arm | ||
23137 | - | 22720 | 90 | 21 | -22.4 | NP_938244 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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