miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2392	-	46380	86	23.5	-26.3	NP_040646		5' arm      3' arm
2391	-	44792	86	22.5	-27.2	NP_040643		5' arm      3' arm
2390	-	43972	87	19	-21.2	NP_040642		5' arm      3' arm
2389	-	40390	87	21.5	-22.2	NP_040633		5' arm      3' arm
2362	+	39881	90	19	-23.2	NP_040632		5' arm      3' arm
2388	-	39110	90	21.5	-27.1	NP_040631		5' arm      3' arm
2387	-	37829	89	24.5	-21.2	NP_040628		5' arm      3' arm
2361	+	36332	90	21	-27	NP_040627		5' arm      3' arm
2360	+	30832	79	19.5	-20.7	NP_040613		5' arm      3' arm
2358	+	21779	90	23.5	-20.3	NP_040604		5' arm      3' arm
2357	+	19476	90	24	-24	NP_040601		5' arm      3' arm
2352	+	17139	83	19.5	-21.3	NP_040600		5' arm      3' arm
2383	-	16758	90	19.5	-21.1	NP_040600		5' arm      3' arm
2354	+	17389	89	21	-19.4	NP_040600		5' arm      3' arm
2355	+	17576	90	20.5	-24.4	NP_040600		5' arm      3' arm
2351	+	15692	88	21.5	-24.2	NP_040600		5' arm      3' arm
2353	+	17297	88	19	-22.21	NP_040600		5' arm      3' arm
2385	-	18391	87	24	-28.7	NP_040600		5' arm      3' arm
2384	-	17039	88	19	-25.7	NP_040600		5' arm      3' arm
2356	+	18594	84	22.5	-26.9	NP_040600		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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