miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2383	-	16758	90	19.5	-21.1	NP_040600		5' arm      3' arm
2384	-	17039	88	19	-25.7	NP_040600		5' arm      3' arm
2380	-	14967	85	19.5	-20.3	NP_040599		5' arm      3' arm
2350	+	14592	90	21.5	-27	NP_040598		5' arm      3' arm
2349	+	14329	89	20.5	-25.4	NP_040598		5' arm      3' arm
2379	-	14845	88	19	-29.8	NP_040598		5' arm      3' arm
2378	-	14755	81	21.5	-19.4	NP_040598		5' arm      3' arm
2347	+	13914	90	19	-20.8	NP_040597		5' arm      3' arm
2346	+	13248	89	23	-21.1	NP_040596		5' arm      3' arm
2377	-	11419	88	19.5	-28.1	NP_040595		5' arm      3' arm
2376	-	10923	89	20	-29.7	NP_040595		5' arm      3' arm
2341	+	10540	89	21	-30.7	NP_040595		5' arm      3' arm
2345	+	12646	90	22.5	-25.5	NP_040595		5' arm      3' arm
2343	+	10855	90	22	-22.9	NP_040595		5' arm      3' arm
2344	+	11901	90	20.5	-23.3	NP_040595		5' arm      3' arm
2342	+	10752	89	20.5	-20.2	NP_040595		5' arm      3' arm
2375	-	10369	88	19	-20.1	NP_040594		5' arm      3' arm
2340	+	9581	89	22	-21.8	NP_040592		5' arm      3' arm
2339	+	7510	90	21	-24.7	NP_040588		5' arm      3' arm
2338	+	7068	89	19	-23.3	NP_040587		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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