miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1024	+	50008	82	20	-22	NP_049532		5' arm      3' arm
1008	+	25626	84	19.5	-22	NP_049503		5' arm      3' arm
1023	+	49438	86	21	-22.2	NP_049532		5' arm      3' arm
1038	-	15299	87	21.5	-22.2	NP_049490		5' arm      3' arm
1015	+	37429	89	22.5	-22.3	NP_049518		5' arm      3' arm
1021	+	46818	89	20	-23.4	NP_049528		5' arm      3' arm
1003	+	14646	85	20	-23.56	NP_049489		5' arm      3' arm
1022	+	47608	84	23.5	-23.6	NP_049530		5' arm      3' arm
1032	+	61094	90	24	-23.8			5' arm      3' arm
1013	+	34262	88	23	-24	NP_049513		5' arm      3' arm
1043	-	27953	90	20.5	-24.1	NP_049507		5' arm      3' arm
1014	+	36811	89	23	-24.2	NP_049517		5' arm      3' arm
1027	+	52128	88	23	-24.5	NP_049532		5' arm      3' arm
1004	+	16649	89	21.5	-24.7	NP_049493		5' arm      3' arm
1010	+	26172	86	21.5	-24.9	NP_049505		5' arm      3' arm
1050	-	51716	87	21.5	-25	NP_049532		5' arm      3' arm
1006	+	23965	86	22	-25.44	NP_049502		5' arm      3' arm
1016	+	38160	87	22	-26	NP_049519		5' arm      3' arm
1041	-	24818	86	20	-26.3	NP_049502		5' arm      3' arm
1042	-	25738	89	23.5	-26.3	NP_049503		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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