miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1043	-	27953	90	20.5	-24.1	NP_049507		5' arm      3' arm
1013	+	34262	88	23	-24	NP_049513		5' arm      3' arm
1032	+	61094	90	24	-23.8			5' arm      3' arm
1022	+	47608	84	23.5	-23.6	NP_049530		5' arm      3' arm
1003	+	14646	85	20	-23.56	NP_049489		5' arm      3' arm
1021	+	46818	89	20	-23.4	NP_049528		5' arm      3' arm
1015	+	37429	89	22.5	-22.3	NP_049518		5' arm      3' arm
1038	-	15299	87	21.5	-22.2	NP_049490		5' arm      3' arm
1023	+	49438	86	21	-22.2	NP_049532		5' arm      3' arm
1024	+	50008	82	20	-22	NP_049532		5' arm      3' arm
1008	+	25626	84	19.5	-22	NP_049503		5' arm      3' arm
1009	+	26016	85	21.5	-21.9			5' arm      3' arm
1040	-	24489	89	19.5	-21.81	NP_049502		5' arm      3' arm
1019	+	42892	90	19.5	-21.5	NP_049523		5' arm      3' arm
1045	-	38786	90	19	-21.5	NP_049519		5' arm      3' arm
1026	+	51285	88	19.5	-21.3	NP_049532		5' arm      3' arm
1017	+	40995	89	20.5	-21.2	NP_049522		5' arm      3' arm
1033	-	4158	90	20	-21.1	NP_049469		5' arm      3' arm
1046	-	39157	88	19.5	-21	NP_049519		5' arm      3' arm
1044	-	38499	90	21	-21	NP_049519		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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