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GenBank Identifier | RefSeq Acc. | Name |
41057352 | NC_005340.1 | Bacteriophage PSP3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26012 | - | 16600 | 90 | 26 | -20.1 | NP_958077 | 5' arm 3' arm | ||
25988 | + | 16321 | 89 | 25.5 | -28 | NP_958077 | 5' arm 3' arm | ||
25998 | + | 30524 | 90 | 24.5 | -22.4 | 5' arm 3' arm | |||
26002 | - | 2777 | 85 | 23.5 | -19.4 | NP_958058 | 5' arm 3' arm | ||
25985 | + | 13126 | 89 | 23 | -22.6 | NP_958074 | 5' arm 3' arm | ||
25996 | + | 28253 | 89 | 23 | -23.1 | NP_958093 | 5' arm 3' arm | ||
25980 | + | 8205 | 90 | 23 | -20.34 | NP_958066 | 5' arm 3' arm | ||
26015 | - | 19502 | 87 | 23 | -23.5 | NP_958080 | 5' arm 3' arm | ||
26009 | - | 13015 | 90 | 23 | -20 | NP_958074 | 5' arm 3' arm | ||
25992 | + | 18859 | 90 | 22.5 | -20.4 | NP_958080 | 5' arm 3' arm | ||
25991 | + | 17884 | 86 | 22.5 | -26.1 | NP_958080 | 5' arm 3' arm | ||
25997 | + | 28805 | 88 | 22 | -30.1 | NP_958093 | 5' arm 3' arm | ||
26007 | - | 9430 | 86 | 22 | -20.2 | NP_958069 | 5' arm 3' arm | ||
25986 | + | 13316 | 90 | 22 | -25.4 | NP_958074 | 5' arm 3' arm | ||
25981 | + | 8537 | 86 | 22 | -30.2 | NP_958066 | 5' arm 3' arm | ||
25999 | - | 414 | 89 | 21.5 | -21.5 | NP_958056 | 5' arm 3' arm | ||
26005 | - | 4772 | 89 | 21.5 | -19.7 | NP_958059 | 5' arm 3' arm | ||
26017 | - | 23984 | 87 | 21.5 | -22.3 | NP_958086 | 5' arm 3' arm | ||
25984 | + | 10072 | 89 | 21 | -22.6 | NP_958070 | 5' arm 3' arm | ||
25975 | + | 848 | 90 | 21 | -22.2 | NP_958056 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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