miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628002 NC_001650.1 Equid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3645 + 43906 90 31.5 -27.7 5' arm      3' arm
3802 + 161948 78 31 -34.5 5' arm      3' arm
3993 - 126886 90 30 -31.8 NP_042661 5' arm      3' arm
3789 + 150685 90 30 -30.7 5' arm      3' arm
3623 + 38122 90 29.5 -22.9 5' arm      3' arm
3634 + 41504 88 29 -27.54 5' arm      3' arm
4035 - 162030 90 29 -30.8 5' arm      3' arm
3795 + 152153 89 28.5 -29.2 5' arm      3' arm
3793 + 151964 90 28 -28 5' arm      3' arm
3986 - 125571 86 28 -25 NP_042661 5' arm      3' arm
3794 + 152054 90 28 -28 5' arm      3' arm
3627 + 39452 86 28 -24.7 5' arm      3' arm
3629 + 40329 89 27.5 -23.1 5' arm      3' arm
3989 - 126293 88 27.5 -21.7 NP_042661 5' arm      3' arm
3637 + 41956 90 27.5 -27.9 5' arm      3' arm
3983 - 124780 88 27.5 -28.9 NP_042661 5' arm      3' arm
3630 + 40505 86 27.5 -25.9 5' arm      3' arm
3635 + 41687 87 27.5 -27.6 5' arm      3' arm
3628 + 39733 89 27.5 -25.9 5' arm      3' arm
4019 - 141893 90 27.5 -29.4 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.