miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8355	-	10740	90	26.5	-32.6	NP_049377		5' arm      3' arm
8345	+	24453	87	24	-34.1	NP_597871		5' arm      3' arm
8333	+	13090	89	24	-25.2	NP_049378		5' arm      3' arm
8349	-	1302	87	23.5	-22.1			5' arm      3' arm
8321	+	4321	88	23.5	-22.5	NP_597866		5' arm      3' arm
8328	+	8228	89	23	-21.6			5' arm      3' arm
8365	-	15600	89	23	-28.9			5' arm      3' arm
8340	+	21341	87	22.5	-23.1	NP_597870		5' arm      3' arm
8358	-	11245	89	22.5	-19.4	NP_049377		5' arm      3' arm
8361	-	12261	90	22.5	-21.6	NP_049378		5' arm      3' arm
8377	-	21096	87	22	-26.6	NP_049381		5' arm      3' arm
8380	-	25570	83	22	-26.5	NP_597872		5' arm      3' arm
8367	-	16173	89	22	-27.1	NP_597867		5' arm      3' arm
8320	+	4024	86	22	-21.3	NP_597866		5' arm      3' arm
8324	+	5074	90	22	-23.2	NP_597866		5' arm      3' arm
8364	-	14968	87	22	-21	NP_049379		5' arm      3' arm
8363	-	12976	90	21.5	-23.2	NP_049378		5' arm      3' arm
8378	-	24973	90	21.5	-25.9	NP_597871		5' arm      3' arm
8318	+	1917	89	21.5	-22.2	NP_597864		5' arm      3' arm
8384	-	32933	87	21.5	-26.3	NP_597880		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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