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| GenBank Identifier | RefSeq Acc. | Name |
| 46852402 | NC_005869.1 | Porcine adenovirus A |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27474 | - | 27778 | 90 | 20 | -27.3 | YP_009216 | 5' arm 3' arm | ||
| 27448 | - | 13522 | 89 | 21 | -26.7 | YP_009204 | 5' arm 3' arm | ||
| 27420 | + | 9322 | 90 | 21.5 | -26.4 | YP_009202 | 5' arm 3' arm | ||
| 27475 | - | 27986 | 85 | 20 | -26.3 | YP_009217 | 5' arm 3' arm | ||
| 27439 | + | 32461 | 90 | 20 | -26.1 | YP_009222 | 5' arm 3' arm | ||
| 27440 | + | 33249 | 89 | 20.5 | -25.6 | YP_009224 | 5' arm 3' arm | ||
| 27472 | - | 27542 | 87 | 21.5 | -25.5 | YP_009216 | 5' arm 3' arm | ||
| 27446 | - | 12807 | 89 | 21 | -25.2 | YP_009204 | 5' arm 3' arm | ||
| 27460 | - | 23104 | 90 | 20 | -25.1 | YP_009212 | 5' arm 3' arm | ||
| 27450 | - | 14632 | 89 | 22.5 | -25 | YP_009205 | 5' arm 3' arm | ||
| 27416 | + | 7047 | 88 | 23.5 | -24.7 | YP_009201 | 5' arm 3' arm | ||
| 27412 | + | 5506 | 90 | 21.5 | -24.7 | YP_009201 | 5' arm 3' arm | ||
| 27434 | + | 23278 | 90 | 21 | -24.7 | YP_009212 | 5' arm 3' arm | ||
| 27452 | - | 15206 | 87 | 22 | -24.7 | 5' arm 3' arm | |||
| 27457 | - | 20890 | 83 | 22.5 | -24.4 | YP_009210 | 5' arm 3' arm | ||
| 27424 | + | 11337 | 86 | 19 | -24.3 | YP_009203 | 5' arm 3' arm | ||
| 27413 | + | 5636 | 89 | 24.5 | -24.1 | YP_009201 | 5' arm 3' arm | ||
| 27468 | - | 25548 | 83 | 20 | -24 | YP_009213 | 5' arm 3' arm | ||
| 27441 | - | 3960 | 90 | 24.5 | -24 | YP_009199 | 5' arm 3' arm | ||
| 27435 | + | 23482 | 89 | 20 | -23.9 | YP_009212 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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