miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11330	+	42125	89	21.5	-24.1	NP_203357		5' arm      3' arm
11329	+	41683	90	22.5	-19.4	NP_203357		5' arm      3' arm
11331	+	43939	89	20.5	-33.4	NP_203360		5' arm      3' arm
11369	-	45902	89	20	-27.2	NP_203361		5' arm      3' arm
11333	+	47246	90	20.5	-20.7	NP_203363		5' arm      3' arm
11370	-	47808	90	22	-21.2	NP_203363		5' arm      3' arm
11375	-	54032	87	19.5	-23.1	NP_203369		5' arm      3' arm
11339	+	54692	88	20.5	-25.2	NP_203370		5' arm      3' arm
11377	-	55439	82	20	-21	NP_203371		5' arm      3' arm
11378	-	59155	89	24.5	-20.71	NP_203371		5' arm      3' arm
11379	-	61720	90	23.5	-19.7	NP_203374		5' arm      3' arm
11380	-	63155	90	19.5	-23	NP_203376		5' arm      3' arm
11340	+	63068	90	19	-25.9	NP_203376		5' arm      3' arm
11382	-	64465	87	20.5	-21.8	NP_203377		5' arm      3' arm
11381	-	64040	90	21.5	-20.3	NP_203377		5' arm      3' arm
11341	+	64337	89	19	-21.7	NP_203377		5' arm      3' arm
11384	-	65822	90	20	-25.5	NP_203378		5' arm      3' arm
11383	-	65280	89	20	-22.8	NP_203378		5' arm      3' arm
11342	+	67656	87	21	-27.61	NP_203380		5' arm      3' arm
11385	-	67757	90	19	-21.1	NP_203380		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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