miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21003	-	11976	88	19.5	-26.8			5' arm      3' arm
21014	-	72470	90	22.5	-23.7			5' arm      3' arm
20984	+	25677	89	19.5	-19.6			5' arm      3' arm
21001	-	1806	88	28	-20.4			5' arm      3' arm
20991	+	40185	89	25	-21.6			5' arm      3' arm
21005	-	25744	88	20	-22.1			5' arm      3' arm
21000	-	199	77	28.5	-32.3	NP_835588		5' arm      3' arm
20982	+	3229	86	21	-20.9	NP_835592		5' arm      3' arm
21002	-	10432	89	20	-22.2	NP_835600		5' arm      3' arm
21004	-	13699	85	23.5	-20.1	NP_835602		5' arm      3' arm
20983	+	15569	86	21.5	-19.7	NP_835605		5' arm      3' arm
20985	+	28951	89	21	-34.54	NP_835619		5' arm      3' arm
21007	-	29004	84	21	-22.6	NP_835619		5' arm      3' arm
21006	-	27419	90	20	-23	NP_835619		5' arm      3' arm
20986	+	34063	88	21.5	-25.8	NP_835625		5' arm      3' arm
21008	-	37937	90	19	-27	NP_835627		5' arm      3' arm
20987	+	38524	90	23.5	-26.9	NP_835629		5' arm      3' arm
20988	+	38636	85	22.5	-25.82	NP_835629		5' arm      3' arm
21009	-	39007	85	23	-29.7	NP_835630		5' arm      3' arm
20989	+	39022	90	23.5	-24.9	NP_835630		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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