miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30425	+	9864	88	24.5	-23.1			5' arm      3' arm
30547	-	26918	89	22.5	-21			5' arm      3' arm
30490	-	354	89	21	-21.4	YP_164037		5' arm      3' arm
30493	-	857	90	20.5	-24.3	YP_164038		5' arm      3' arm
30491	-	593	86	19	-20.3	YP_164038		5' arm      3' arm
30492	-	699	90	19.5	-20.3	YP_164038		5' arm      3' arm
30404	+	1199	86	21.5	-25.3	YP_164039		5' arm      3' arm
30405	+	1426	89	20.5	-30.6	YP_164039		5' arm      3' arm
30494	-	1232	89	21.5	-21.1	YP_164039		5' arm      3' arm
30496	-	2383	87	20	-20.1	YP_164041		5' arm      3' arm
30406	+	2020	88	21.5	-23.7	YP_164041		5' arm      3' arm
30407	+	2170	87	19.5	-19.7	YP_164041		5' arm      3' arm
30495	-	2295	90	19	-26.6	YP_164041		5' arm      3' arm
30409	+	2830	89	22.5	-23	YP_164042		5' arm      3' arm
30408	+	2679	89	20	-23.1	YP_164042		5' arm      3' arm
30410	+	3269	88	24	-24.7	YP_164043		5' arm      3' arm
30411	+	3969	90	19.5	-28.3	YP_164045		5' arm      3' arm
30497	-	3856	90	20	-21	YP_164045		5' arm      3' arm
30412	+	4209	90	19.5	-22	YP_164046		5' arm      3' arm
30498	-	4241	89	20	-22.8	YP_164046		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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