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GenBank Identifier | RefSeq Acc. | Name |
56692568 | NC_006548.1 | Bacteriophage B3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30553 | - | 28150 | 85 | 25 | -35.9 | YP_164086 | 5' arm 3' arm | ||
30506 | - | 11784 | 89 | 23 | -34.7 | YP_164060 | 5' arm 3' arm | ||
30507 | - | 12185 | 87 | 19 | -33.7 | YP_164061 | 5' arm 3' arm | ||
30465 | + | 26993 | 89 | 21 | -32.9 | YP_164086 | 5' arm 3' arm | ||
30545 | - | 25561 | 90 | 20 | -32.5 | YP_164081 | 5' arm 3' arm | ||
30470 | + | 29848 | 85 | 21 | -32.4 | YP_164086 | 5' arm 3' arm | ||
30548 | - | 27081 | 88 | 21.5 | -32 | YP_164086 | 5' arm 3' arm | ||
30539 | - | 23598 | 88 | 20 | -31.7 | YP_164077 | 5' arm 3' arm | ||
30520 | - | 17021 | 90 | 23 | -31.4 | YP_164068 | 5' arm 3' arm | ||
30541 | - | 23943 | 90 | 24 | -31.4 | YP_164078 | 5' arm 3' arm | ||
30479 | + | 33580 | 89 | 21 | -31.3 | YP_164089 | 5' arm 3' arm | ||
30424 | + | 9314 | 89 | 20 | -31.3 | YP_164052 | 5' arm 3' arm | ||
30540 | - | 23836 | 90 | 21 | -31.1 | YP_164078 | 5' arm 3' arm | ||
30415 | + | 5283 | 87 | 20 | -30.9 | YP_164047 | 5' arm 3' arm | ||
30417 | + | 5546 | 89 | 22.5 | -30.9 | YP_164048 | 5' arm 3' arm | ||
30510 | - | 13088 | 89 | 25.5 | -30.7 | YP_164063 | 5' arm 3' arm | ||
30405 | + | 1426 | 89 | 20.5 | -30.6 | YP_164039 | 5' arm 3' arm | ||
30571 | - | 36209 | 89 | 20 | -30.3 | YP_164093 | 5' arm 3' arm | ||
30447 | + | 20045 | 89 | 19 | -29.7 | YP_164072 | 5' arm 3' arm | ||
30445 | + | 18497 | 89 | 20 | -29.4 | YP_164069 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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