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GenBank Identifier | RefSeq Acc. | Name |
56692568 | NC_006548.1 | Bacteriophage B3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30574 | - | 37015 | 89 | 21 | -29 | YP_164093 | 5' arm 3' arm | ||
30533 | - | 21715 | 79 | 22 | -28.8 | YP_164075 | 5' arm 3' arm | ||
30523 | - | 17615 | 90 | 23 | -28.7 | YP_164068 | 5' arm 3' arm | ||
30487 | + | 36384 | 90 | 24 | -28.3 | YP_164093 | 5' arm 3' arm | ||
30411 | + | 3969 | 90 | 19.5 | -28.3 | YP_164045 | 5' arm 3' arm | ||
30515 | - | 15669 | 89 | 21 | -28.1 | YP_164067 | 5' arm 3' arm | ||
30573 | - | 36861 | 86 | 21 | -28.1 | YP_164093 | 5' arm 3' arm | ||
30528 | - | 19919 | 90 | 19.5 | -28 | YP_164072 | 5' arm 3' arm | ||
30457 | + | 23045 | 85 | 21 | -27.9 | YP_164076 | 5' arm 3' arm | ||
30454 | + | 22611 | 90 | 21.5 | -27.81 | YP_164076 | 5' arm 3' arm | ||
30512 | - | 14413 | 90 | 20.5 | -27.8 | YP_164066 | 5' arm 3' arm | ||
30561 | - | 30447 | 87 | 21.5 | -27.7 | YP_164087 | 5' arm 3' arm | ||
30563 | - | 32411 | 88 | 24.5 | -27.6 | YP_164089 | 5' arm 3' arm | ||
30508 | - | 12408 | 89 | 19.5 | -27.3 | YP_164061 | 5' arm 3' arm | ||
30505 | - | 8734 | 89 | 20.5 | -27.2 | YP_164051 | 5' arm 3' arm | ||
30549 | - | 27240 | 89 | 23 | -27.2 | YP_164086 | 5' arm 3' arm | ||
30428 | + | 11033 | 88 | 23 | -27.1 | YP_164057 | 5' arm 3' arm | ||
30557 | - | 29246 | 89 | 21 | -27.1 | YP_164086 | 5' arm 3' arm | ||
30521 | - | 17111 | 89 | 19 | -26.8 | YP_164068 | 5' arm 3' arm | ||
30432 | + | 13792 | 88 | 19 | -26.7 | YP_164064 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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