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GenBank Identifier | RefSeq Acc. | Name |
56692568 | NC_006548.1 | Bacteriophage B3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30491 | - | 593 | 86 | 19 | -20.3 | YP_164038 | 5' arm 3' arm | ||
30414 | + | 4535 | 90 | 19 | -20.9 | YP_164047 | 5' arm 3' arm | ||
30409 | + | 2830 | 89 | 22.5 | -23 | YP_164042 | 5' arm 3' arm | ||
30413 | + | 4441 | 89 | 22 | -24.61 | YP_164047 | 5' arm 3' arm | ||
30404 | + | 1199 | 86 | 21.5 | -25.3 | YP_164039 | 5' arm 3' arm | ||
30406 | + | 2020 | 88 | 21.5 | -23.7 | YP_164041 | 5' arm 3' arm | ||
30405 | + | 1426 | 89 | 20.5 | -30.6 | YP_164039 | 5' arm 3' arm | ||
30408 | + | 2679 | 89 | 20 | -23.1 | YP_164042 | 5' arm 3' arm | ||
30407 | + | 2170 | 87 | 19.5 | -19.7 | YP_164041 | 5' arm 3' arm | ||
30411 | + | 3969 | 90 | 19.5 | -28.3 | YP_164045 | 5' arm 3' arm | ||
30412 | + | 4209 | 90 | 19.5 | -22 | YP_164046 | 5' arm 3' arm | ||
30410 | + | 3269 | 88 | 24 | -24.7 | YP_164043 | 5' arm 3' arm | ||
30416 | + | 5440 | 87 | 23 | -22.9 | YP_164047 | 5' arm 3' arm | ||
30423 | + | 9197 | 88 | 23 | -20.5 | YP_164052 | 5' arm 3' arm | ||
30417 | + | 5546 | 89 | 22.5 | -30.9 | YP_164048 | 5' arm 3' arm | ||
30420 | + | 7682 | 89 | 22.5 | -20.8 | YP_164049 | 5' arm 3' arm | ||
30421 | + | 8112 | 90 | 22 | -21.6 | YP_164049 | 5' arm 3' arm | ||
30422 | + | 8266 | 89 | 21 | -20.9 | YP_164050 | 5' arm 3' arm | ||
30415 | + | 5283 | 87 | 20 | -30.9 | YP_164047 | 5' arm 3' arm | ||
30424 | + | 9314 | 89 | 20 | -31.3 | YP_164052 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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