miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56692568 NC_006548.1 Bacteriophage B3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30492 - 699 90 19.5 -20.3 YP_164038 5' arm      3' arm
30513 - 14928 85 19.5 -20.4 YP_164067 5' arm      3' arm
30423 + 9197 88 23 -20.5 YP_164052 5' arm      3' arm
30437 + 15625 90 19.5 -20.5 YP_164067 5' arm      3' arm
30476 + 32036 88 20 -20.6 YP_164089 5' arm      3' arm
30543 - 25071 90 21 -20.6 YP_164080 5' arm      3' arm
30444 + 18124 89 19 -20.7 YP_164069 5' arm      3' arm
30570 - 35843 89 19.5 -20.7 YP_164093 5' arm      3' arm
30426 + 10117 90 19.5 -20.8 YP_164054 5' arm      3' arm
30420 + 7682 89 22.5 -20.8 YP_164049 5' arm      3' arm
30475 + 31904 90 21.5 -20.9 YP_164088 5' arm      3' arm
30483 + 34365 89 19 -20.9 YP_164090 5' arm      3' arm
30414 + 4535 90 19 -20.9 YP_164047 5' arm      3' arm
30472 + 30864 81 20 -20.9 YP_164087 5' arm      3' arm
30422 + 8266 89 21 -20.9 YP_164050 5' arm      3' arm
30455 + 22752 89 20 -20.9 YP_164076 5' arm      3' arm
30429 + 11779 89 21.5 -20.9 YP_164060 5' arm      3' arm
30547 - 26918 89 22.5 -21 5' arm      3' arm
30572 - 36473 90 20 -21 YP_164093 5' arm      3' arm
30489 + 37093 89 19.5 -21 YP_164093 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.