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GenBank Identifier | RefSeq Acc. | Name |
56692568 | NC_006548.1 | Bacteriophage B3 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30559 | - | 29604 | 90 | 19.5 | -19.4 | YP_164086 | 5' arm 3' arm | ||
30433 | + | 13925 | 86 | 19.5 | -19.4 | YP_164065 | 5' arm 3' arm | ||
30481 | + | 33901 | 84 | 20 | -19.5 | YP_164090 | 5' arm 3' arm | ||
30431 | + | 13528 | 86 | 19 | -19.5 | YP_164064 | 5' arm 3' arm | ||
30514 | - | 15427 | 81 | 20 | -19.5 | YP_164067 | 5' arm 3' arm | ||
30511 | - | 14218 | 75 | 19 | -19.6 | YP_164065 | 5' arm 3' arm | ||
30474 | + | 31519 | 90 | 22 | -19.6 | YP_164088 | 5' arm 3' arm | ||
30439 | + | 16427 | 89 | 19.5 | -19.6 | YP_164068 | 5' arm 3' arm | ||
30407 | + | 2170 | 87 | 19.5 | -19.7 | YP_164041 | 5' arm 3' arm | ||
30427 | + | 10671 | 88 | 22 | -19.7 | YP_164056 | 5' arm 3' arm | ||
30532 | - | 21336 | 90 | 22.5 | -19.8 | YP_164074 | 5' arm 3' arm | ||
30562 | - | 31043 | 88 | 20 | -19.8 | YP_164087 | 5' arm 3' arm | ||
30526 | - | 18504 | 88 | 22 | -19.8 | YP_164069 | 5' arm 3' arm | ||
30518 | - | 16586 | 90 | 19 | -19.9 | YP_164068 | 5' arm 3' arm | ||
30519 | - | 16713 | 89 | 23 | -19.9 | YP_164068 | 5' arm 3' arm | ||
30451 | + | 21926 | 89 | 20 | -20.1 | YP_164075 | 5' arm 3' arm | ||
30496 | - | 2383 | 87 | 20 | -20.1 | YP_164041 | 5' arm 3' arm | ||
30537 | - | 22579 | 86 | 21.5 | -20.3 | YP_164076 | 5' arm 3' arm | ||
30492 | - | 699 | 90 | 19.5 | -20.3 | YP_164038 | 5' arm 3' arm | ||
30517 | - | 16374 | 88 | 20.5 | -20.3 | YP_164068 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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