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GenBank Identifier | RefSeq Acc. | Name |
18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
13091 | + | 13 | 86 | 20.5 | -20.2 | 5' arm 3' arm | |||
13092 | + | 120 | 89 | 24 | -27.6 | 5' arm 3' arm | |||
13093 | + | 209 | 90 | 21 | -25.2 | 5' arm 3' arm | |||
13094 | + | 367 | 90 | 21.5 | -20.8 | 5' arm 3' arm | |||
13095 | + | 466 | 89 | 26 | -22.6 | 5' arm 3' arm | |||
13096 | + | 624 | 89 | 25.5 | -26 | 5' arm 3' arm | |||
13097 | + | 726 | 90 | 19 | -21.6 | 5' arm 3' arm | |||
13098 | + | 6321 | 90 | 23 | -22.4 | NP_570747 | 5' arm 3' arm | ||
13099 | + | 10832 | 90 | 22.5 | -30.5 | NP_570748 | 5' arm 3' arm | ||
13100 | + | 11091 | 82 | 20.5 | -20 | NP_570748 | 5' arm 3' arm | ||
13101 | + | 13004 | 90 | 19.5 | -24.1 | NP_570749 | 5' arm 3' arm | ||
13102 | + | 14206 | 86 | 24 | -28 | NP_570750 | 5' arm 3' arm | ||
13103 | + | 14849 | 87 | 20.5 | -22.7 | NP_570750 | 5' arm 3' arm | ||
13104 | + | 15017 | 90 | 19 | -30.6 | NP_570750 | 5' arm 3' arm | ||
13105 | + | 18153 | 90 | 21 | -21.8 | NP_570751 | 5' arm 3' arm | ||
13106 | + | 18320 | 86 | 19 | -23.2 | NP_570751 | 5' arm 3' arm | ||
13107 | + | 18773 | 89 | 23.5 | -26.2 | NP_570752 | 5' arm 3' arm | ||
13108 | + | 20857 | 88 | 20 | -28.6 | NP_570754 | 5' arm 3' arm | ||
13109 | + | 22155 | 89 | 21 | -19.5 | 5' arm 3' arm | |||
13110 | + | 23541 | 90 | 21 | -21.9 | NP_598359 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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