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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13116 | + | 28179 | 84 | 19.5 | -19.4 | NP_570757 | 5' arm 3' arm | ||
| 13225 | - | 72633 | 85 | 20.5 | -19.5 | NP_570792 | 5' arm 3' arm | ||
| 13109 | + | 22155 | 89 | 21 | -19.5 | 5' arm 3' arm | |||
| 13166 | + | 125872 | 88 | 23 | -19.5 | NP_570823 | 5' arm 3' arm | ||
| 13117 | + | 28675 | 90 | 20 | -19.6 | NP_570757 | 5' arm 3' arm | ||
| 13269 | - | 123395 | 90 | 22.5 | -19.7 | NP_570821 | 5' arm 3' arm | ||
| 13208 | - | 26817 | 88 | 19.5 | -19.7 | 5' arm 3' arm | |||
| 13267 | - | 119721 | 89 | 20 | -19.8 | NP_570818 | 5' arm 3' arm | ||
| 13234 | - | 97715 | 86 | 26 | -19.8 | NP_570811 | 5' arm 3' arm | ||
| 13167 | + | 126151 | 89 | 21 | -19.9 | NP_570823 | 5' arm 3' arm | ||
| 13192 | - | 14988 | 90 | 20.5 | -19.9 | NP_570750 | 5' arm 3' arm | ||
| 13169 | + | 128023 | 90 | 21.5 | -19.9 | NP_570823 | 5' arm 3' arm | ||
| 13115 | + | 28021 | 90 | 20.5 | -19.9 | NP_570757 | 5' arm 3' arm | ||
| 13100 | + | 11091 | 82 | 20.5 | -20 | NP_570748 | 5' arm 3' arm | ||
| 13254 | - | 113934 | 86 | 29.5 | -20 | 5' arm 3' arm | |||
| 13198 | - | 18338 | 89 | 21.5 | -20.1 | NP_570751 | 5' arm 3' arm | ||
| 13220 | - | 62684 | 90 | 21 | -20.17 | NP_570785 | 5' arm 3' arm | ||
| 13154 | + | 117575 | 81 | 20.5 | -20.2 | 5' arm 3' arm | |||
| 13131 | + | 62041 | 90 | 19.5 | -20.2 | NP_570785 | 5' arm 3' arm | ||
| 13124 | + | 45548 | 90 | 23.5 | -20.2 | NP_570768 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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