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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13254 | - | 113934 | 86 | 29.5 | -20 | 5' arm 3' arm | |||
| 13253 | - | 113748 | 87 | 29 | -24.9 | 5' arm 3' arm | |||
| 13153 | + | 116979 | 88 | 29 | -24.6 | 5' arm 3' arm | |||
| 13261 | - | 117067 | 90 | 28.5 | -26.5 | 5' arm 3' arm | |||
| 13249 | - | 113152 | 89 | 28 | -32.7 | 5' arm 3' arm | |||
| 13202 | - | 19255 | 89 | 27 | -20.7 | NP_570752 | 5' arm 3' arm | ||
| 13149 | + | 114502 | 89 | 27 | -21.6 | 5' arm 3' arm | |||
| 13258 | - | 114876 | 84 | 27 | -21.9 | 5' arm 3' arm | |||
| 13136 | + | 79906 | 90 | 27 | -31.1 | NP_570798 | 5' arm 3' arm | ||
| 13257 | - | 114772 | 89 | 27 | -28.7 | 5' arm 3' arm | |||
| 13252 | - | 113572 | 88 | 26.5 | -30.3 | NP_598364 | 5' arm 3' arm | ||
| 13156 | + | 118327 | 87 | 26 | -21.2 | 5' arm 3' arm | |||
| 13176 | + | 133314 | 89 | 26 | -22.6 | 5' arm 3' arm | |||
| 13234 | - | 97715 | 86 | 26 | -19.8 | NP_570811 | 5' arm 3' arm | ||
| 13095 | + | 466 | 89 | 26 | -22.6 | 5' arm 3' arm | |||
| 13190 | - | 13597 | 89 | 26 | -34 | NP_570749 | 5' arm 3' arm | ||
| 13256 | - | 114590 | 88 | 26 | -22.2 | 5' arm 3' arm | |||
| 13251 | - | 113405 | 89 | 25.5 | -22.2 | 5' arm 3' arm | |||
| 13096 | + | 624 | 89 | 25.5 | -26 | 5' arm 3' arm | |||
| 13157 | + | 118653 | 88 | 25.5 | -33.7 | NP_598366 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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