miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
481	-	13376	90	25.5	-20.9	AP_000378		5' arm      3' arm
453	+	5374	89	24.5	-21.9	AP_000375		5' arm      3' arm
488	-	22378	87	24	-21.2	AP_000384		5' arm      3' arm
449	+	2408	88	23.5	-26.1	AP_000371		5' arm      3' arm
490	-	28371	88	23.5	-21.9	AP_000387		5' arm      3' arm
459	+	8674	87	23.5	-23.4			5' arm      3' arm
454	+	5870	89	23.5	-20.6	AP_000375		5' arm      3' arm
474	+	28802	90	23	-25.6	AP_000387		5' arm      3' arm
447	+	1563	88	23	-29.2	AP_000369		5' arm      3' arm
503	-	43584	90	23	-25.8	AP_000398		5' arm      3' arm
491	-	28546	88	23	-21.3	AP_000387		5' arm      3' arm
483	-	16708	88	23	-26.5	AP_000380		5' arm      3' arm
468	+	14560	90	22.5	-23	AP_000379		5' arm      3' arm
493	-	29387	90	22.5	-23.3	AP_000388		5' arm      3' arm
478	-	3940	90	22.5	-19.6	AP_000373		5' arm      3' arm
487	-	20764	86	22.5	-24.2	AP_000384		5' arm      3' arm
466	+	12082	88	22	-20.5	AP_000377		5' arm      3' arm
477	+	37881	90	22	-24.5	AP_000395		5' arm      3' arm
457	+	8005	89	22	-20.6			5' arm      3' arm
450	+	2526	89	22	-19.7	AP_000371		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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