miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
16933	+	32495	88	22	-22.6	NP_700417		5' arm      3' arm
16940	-	2555	87	19	-22.6	NP_700377		5' arm      3' arm
16912	+	2342	90	24.5	-22.2	NP_700376		5' arm      3' arm
16943	-	7856	81	22	-22.2	NP_700386		5' arm      3' arm
16925	+	17353	86	21	-22.1	NP_700397		5' arm      3' arm
16913	+	6777	89	21	-22	NP_700383		5' arm      3' arm
16941	-	3042	79	19	-21.9	NP_700377		5' arm      3' arm
16947	-	12829	86	22.5	-21.8	NP_700390		5' arm      3' arm
16953	-	31171	90	19	-21.8	NP_700415		5' arm      3' arm
16931	+	29966	85	19	-21.4	NP_700414		5' arm      3' arm
16921	+	11349	90	22	-21.3	NP_700389		5' arm      3' arm
16954	-	34192	87	19	-21.2	NP_700419		5' arm      3' arm
16935	+	34023	89	19.5	-21.1	NP_700419		5' arm      3' arm
16922	+	11829	89	19	-21	NP_700389		5' arm      3' arm
16956	-	34621	89	20.5	-20.8	NP_700420		5' arm      3' arm
16929	+	29168	90	22	-20.7			5' arm      3' arm
16930	+	29542	90	19.5	-20.6	NP_700413		5' arm      3' arm
16955	-	34433	90	22.5	-20.3	NP_700419		5' arm      3' arm
16948	-	13578	79	19	-20.2	NP_700391		5' arm      3' arm
16924	+	16136	90	19	-20.2	NP_700395		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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