miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12381	+	38377	89	21.5	-22.2	NP_542305		5' arm      3' arm
12382	+	38577	84	21	-20.6	NP_542306		5' arm      3' arm
12383	+	39590	90	20	-21.4	NP_542308		5' arm      3' arm
12384	+	40248	88	19.5	-27.8	NP_542308		5' arm      3' arm
12385	+	40561	90	21.5	-22.7	NP_542309		5' arm      3' arm
12386	+	42754	90	21	-23.1	NP_542312		5' arm      3' arm
12387	+	44025	90	21	-24.1	NP_542314		5' arm      3' arm
12388	+	44438	90	21	-22.5	NP_542316		5' arm      3' arm
12389	+	44826	86	22	-23.2	NP_542316		5' arm      3' arm
12390	+	44975	86	21.5	-21.5	NP_542317		5' arm      3' arm
12391	+	45151	86	21	-25.5	NP_542317		5' arm      3' arm
12392	+	45257	90	21	-23.4	NP_542317		5' arm      3' arm
12393	+	45662	89	19	-25	NP_542318		5' arm      3' arm
12394	+	46011	89	21.5	-28.2	NP_542319		5' arm      3' arm
12395	+	46407	81	20.5	-20.8	NP_542320		5' arm      3' arm
12396	+	48819	89	19.5	-19.6	NP_542325		5' arm      3' arm
12397	+	49086	90	19.5	-22.5	NP_542326		5' arm      3' arm
12398	+	49408	88	19	-24.4	NP_542326		5' arm      3' arm
12399	+	49628	90	22	-20.9	NP_542326		5' arm      3' arm
12400	+	50433	90	22	-30.01	NP_542328		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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