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GenBank Identifier | RefSeq Acc. | Name |
20026600 | NC_003521.1 | Chimpanzee cytomegalovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
13934 | + | 401 | 90 | 21 | -28.5 | 5' arm 3' arm | |||
13935 | + | 5516 | 89 | 20.5 | -28.6 | 5' arm 3' arm | |||
13936 | + | 5788 | 89 | 21.5 | -31.3 | 5' arm 3' arm | |||
13937 | + | 6009 | 90 | 24 | -20.8 | 5' arm 3' arm | |||
13938 | + | 6377 | 90 | 21 | -28.1 | 5' arm 3' arm | |||
13939 | + | 6488 | 89 | 23.5 | -20.7 | 5' arm 3' arm | |||
13940 | + | 10443 | 89 | 20 | -28.07 | 5' arm 3' arm | |||
13941 | + | 10546 | 90 | 19.5 | -24 | NP_612649 | 5' arm 3' arm | ||
13942 | + | 12106 | 86 | 20 | -26 | NP_612651 | 5' arm 3' arm | ||
13943 | + | 12208 | 90 | 22 | -19.6 | NP_612651 | 5' arm 3' arm | ||
13944 | + | 12402 | 85 | 20 | -22.5 | NP_612651 | 5' arm 3' arm | ||
13945 | + | 13810 | 87 | 22.5 | -28.4 | NP_612653 | 5' arm 3' arm | ||
13946 | + | 14193 | 89 | 23 | -24.2 | NP_612653 | 5' arm 3' arm | ||
13947 | + | 16545 | 88 | 21.5 | -21.9 | 5' arm 3' arm | |||
13948 | + | 16763 | 88 | 20 | -22.6 | NP_612657 | 5' arm 3' arm | ||
13949 | + | 17509 | 90 | 20.5 | -24.2 | NP_612657 | 5' arm 3' arm | ||
13950 | + | 19175 | 89 | 20.5 | -23.3 | NP_612658 | 5' arm 3' arm | ||
13951 | + | 19264 | 88 | 19.5 | -22.4 | NP_612658 | 5' arm 3' arm | ||
13952 | + | 19925 | 90 | 20 | -23.9 | NP_612659 | 5' arm 3' arm | ||
13953 | + | 23582 | 84 | 20.5 | -20 | NP_612664 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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