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GenBank Identifier | RefSeq Acc. | Name |
9628835 | NC_001720.1 | Fowl adenovirus A |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
4367 | - | 23436 | 87 | 21 | -22.5 | 5' arm 3' arm | |||
4346 | + | 23251 | 82 | 19 | -22 | 5' arm 3' arm | |||
4350 | + | 34005 | 90 | 19.5 | -21.1 | 5' arm 3' arm | |||
4352 | + | 38539 | 79 | 21 | -22.8 | 5' arm 3' arm | |||
4353 | + | 43438 | 90 | 20 | -23.2 | 5' arm 3' arm | |||
4330 | + | 10168 | 90 | 19.5 | -20.32 | 5' arm 3' arm | |||
4334 | + | 12054 | 86 | 20 | -25.2 | 5' arm 3' arm | |||
4386 | - | 38560 | 90 | 19 | -23.5 | 5' arm 3' arm | |||
4384 | - | 37356 | 89 | 21.5 | -23.7 | 5' arm 3' arm | |||
4376 | - | 28401 | 86 | 23.5 | -24.6 | 5' arm 3' arm | |||
4375 | - | 28222 | 90 | 22.5 | -22.3 | 5' arm 3' arm | |||
4329 | + | 8237 | 88 | 21.5 | -23.7 | 5' arm 3' arm | |||
4373 | - | 26759 | 89 | 21.5 | -20.7 | 5' arm 3' arm | |||
4320 | + | 1567 | 89 | 21 | -29.1 | 5' arm 3' arm | |||
4319 | + | 1191 | 90 | 23.5 | -20.2 | NP_043870 | 5' arm 3' arm | ||
4321 | + | 2233 | 90 | 22.5 | -22.6 | NP_043871 | 5' arm 3' arm | ||
4322 | + | 2950 | 87 | 21 | -20.7 | NP_043872 | 5' arm 3' arm | ||
4324 | + | 4146 | 85 | 20.5 | -22.4 | NP_043873 | 5' arm 3' arm | ||
4323 | + | 4001 | 81 | 19 | -25.1 | NP_043874 | 5' arm 3' arm | ||
4354 | - | 5090 | 90 | 24.5 | -24.9 | NP_043875 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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