miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628835 NC_001720.1 Fowl adenovirus A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4367 - 23436 87 21 -22.5 5' arm      3' arm
4346 + 23251 82 19 -22 5' arm      3' arm
4350 + 34005 90 19.5 -21.1 5' arm      3' arm
4352 + 38539 79 21 -22.8 5' arm      3' arm
4353 + 43438 90 20 -23.2 5' arm      3' arm
4330 + 10168 90 19.5 -20.32 5' arm      3' arm
4334 + 12054 86 20 -25.2 5' arm      3' arm
4386 - 38560 90 19 -23.5 5' arm      3' arm
4384 - 37356 89 21.5 -23.7 5' arm      3' arm
4376 - 28401 86 23.5 -24.6 5' arm      3' arm
4375 - 28222 90 22.5 -22.3 5' arm      3' arm
4329 + 8237 88 21.5 -23.7 5' arm      3' arm
4373 - 26759 89 21.5 -20.7 5' arm      3' arm
4320 + 1567 89 21 -29.1 5' arm      3' arm
4319 + 1191 90 23.5 -20.2 NP_043870 5' arm      3' arm
4321 + 2233 90 22.5 -22.6 NP_043871 5' arm      3' arm
4322 + 2950 87 21 -20.7 NP_043872 5' arm      3' arm
4324 + 4146 85 20.5 -22.4 NP_043873 5' arm      3' arm
4323 + 4001 81 19 -25.1 NP_043874 5' arm      3' arm
4354 - 5090 90 24.5 -24.9 NP_043875 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.