miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4365	-	20792	89	20	-32.4	NP_043886		5' arm      3' arm
4368	-	24274	86	22.5	-31.1	NP_043889		5' arm      3' arm
4359	-	17202	87	21.5	-30.2	NP_043884		5' arm      3' arm
4339	+	19966	89	19.5	-30.1	NP_043886		5' arm      3' arm
4327	+	6577	90	22.5	-30	NP_043876		5' arm      3' arm
4320	+	1567	89	21	-29.1			5' arm      3' arm
4363	-	20053	88	20	-28.4	NP_043886		5' arm      3' arm
4351	+	37746	87	20	-27.1	NP_043901		5' arm      3' arm
4343	+	22080	89	20	-26.9	NP_043888		5' arm      3' arm
4325	+	6228	90	23.5	-26.8	NP_043876		5' arm      3' arm
4358	-	14790	90	19	-26.4	NP_043881		5' arm      3' arm
4383	-	30934	86	24.5	-26.2	NP_043892		5' arm      3' arm
4341	+	20876	90	20.5	-25.8	NP_043886		5' arm      3' arm
4335	+	13277	90	20.5	-25.8	NP_043880		5' arm      3' arm
4360	-	17990	89	21	-25.5	NP_043885		5' arm      3' arm
4334	+	12054	86	20	-25.2			5' arm      3' arm
4366	-	20965	90	20.5	-25.2	NP_043886		5' arm      3' arm
4323	+	4001	81	19	-25.1	NP_043874		5' arm      3' arm
4348	+	29914	81	19	-25	NP_043891		5' arm      3' arm
4354	-	5090	90	24.5	-24.9	NP_043875		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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