miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628835 NC_001720.1 Fowl adenovirus A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4365 - 20792 89 20 -32.4 NP_043886 5' arm      3' arm
4368 - 24274 86 22.5 -31.1 NP_043889 5' arm      3' arm
4359 - 17202 87 21.5 -30.2 NP_043884 5' arm      3' arm
4339 + 19966 89 19.5 -30.1 NP_043886 5' arm      3' arm
4327 + 6577 90 22.5 -30 NP_043876 5' arm      3' arm
4320 + 1567 89 21 -29.1 5' arm      3' arm
4363 - 20053 88 20 -28.4 NP_043886 5' arm      3' arm
4351 + 37746 87 20 -27.1 NP_043901 5' arm      3' arm
4343 + 22080 89 20 -26.9 NP_043888 5' arm      3' arm
4325 + 6228 90 23.5 -26.8 NP_043876 5' arm      3' arm
4358 - 14790 90 19 -26.4 NP_043881 5' arm      3' arm
4383 - 30934 86 24.5 -26.2 NP_043892 5' arm      3' arm
4341 + 20876 90 20.5 -25.8 NP_043886 5' arm      3' arm
4335 + 13277 90 20.5 -25.8 NP_043880 5' arm      3' arm
4360 - 17990 89 21 -25.5 NP_043885 5' arm      3' arm
4334 + 12054 86 20 -25.2 5' arm      3' arm
4366 - 20965 90 20.5 -25.2 NP_043886 5' arm      3' arm
4323 + 4001 81 19 -25.1 NP_043874 5' arm      3' arm
4348 + 29914 81 19 -25 NP_043891 5' arm      3' arm
4354 - 5090 90 24.5 -24.9 NP_043875 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.