miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633173 NC_000899.1 Fowl adenovirus D

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
888 + 689 90 20 -20.6 5' arm      3' arm
889 + 903 86 19.5 -21.6 NP_050279 5' arm      3' arm
890 + 1240 89 21.5 -26.6 NP_050279 5' arm      3' arm
891 + 1563 88 23 -29.2 5' arm      3' arm
892 + 2211 90 20.5 -24.4 NP_597818 5' arm      3' arm
893 + 2408 88 23.5 -26.1 NP_597818 5' arm      3' arm
894 + 2526 89 22 -19.7 NP_597818 5' arm      3' arm
895 + 5047 89 20.5 -21.1 5' arm      3' arm
896 + 5179 88 20.5 -23.8 5' arm      3' arm
897 + 5374 89 24.5 -21.9 NP_597822 5' arm      3' arm
898 + 5870 89 23.5 -20.6 5' arm      3' arm
899 + 6019 90 20 -22 5' arm      3' arm
900 + 7447 90 21 -24.4 NP_050281 5' arm      3' arm
901 + 8005 89 22 -20.6 NP_050281 5' arm      3' arm
902 + 8318 88 20 -25.8 NP_050281 5' arm      3' arm
903 + 8674 87 23.5 -23.4 NP_050281 5' arm      3' arm
904 + 8851 90 20.5 -23.7 NP_050281 5' arm      3' arm
905 + 10154 90 22 -20.2 NP_050281 5' arm      3' arm
906 + 10632 86 22 -20.5 NP_050281 5' arm      3' arm
907 + 10743 90 19 -22.9 NP_050281 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.