miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26586 - 32152 89 23 -27.4 5' arm      3' arm
26579 - 29467 90 21 -24.3 NP_958698 5' arm      3' arm
26619 - 40762 89 21 -24.9 NP_958716 5' arm      3' arm
26623 - 42322 87 20.5 -27.5 NP_958719 5' arm      3' arm
26610 - 37991 90 20 -23.7 NP_958711 5' arm      3' arm
26598 - 35535 90 25.5 -22.4 NP_958708 5' arm      3' arm
26596 - 34960 88 23 -23.2 NP_958707 5' arm      3' arm
26600 - 35811 87 22 -22 NP_958709 5' arm      3' arm
26591 - 33678 87 21 -19.5 NP_958705 5' arm      3' arm
26602 - 36029 90 19.5 -20 NP_958709 5' arm      3' arm
26541 - 1596 85 22 -29.6 NP_958674 5' arm      3' arm
26551 - 7831 86 19.5 -34.1 NP_958679 5' arm      3' arm
26587 - 32294 88 19.5 -19.6 NP_958703 5' arm      3' arm
26571 - 24556 89 22.5 -21.7 NP_958694 5' arm      3' arm
26573 - 26490 86 19 -19.9 NP_958696 5' arm      3' arm
26568 - 23571 87 20.5 -22.7 NP_958692 5' arm      3' arm
26563 - 18497 90 21 -27.1 NP_958685 5' arm      3' arm
26561 - 18015 90 20 -25.8 5' arm      3' arm
26555 - 15320 86 19 -19.8 NP_958682 5' arm      3' arm
26553 - 10491 90 21 -23.5 NP_958679 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.