miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26589 - 32507 89 26.5 -25 NP_958704 5' arm      3' arm
26607 - 37298 88 23.5 -20 NP_958711 5' arm      3' arm
26620 - 41417 90 22.5 -29.2 NP_958719 5' arm      3' arm
26593 - 34025 89 19 -25.9 NP_958706 5' arm      3' arm
26612 - 38285 89 23 -25.4 NP_958711 5' arm      3' arm
26568 - 23571 87 20.5 -22.7 NP_958692 5' arm      3' arm
26609 - 37885 86 22 -24.3 NP_958711 5' arm      3' arm
26573 - 26490 86 19 -19.9 NP_958696 5' arm      3' arm
26577 - 28358 87 21.5 -26.2 NP_958698 5' arm      3' arm
26581 - 29942 89 19.5 -22.4 NP_958699 5' arm      3' arm
26583 - 31156 85 20 -20.4 NP_958701 5' arm      3' arm
26584 - 31748 90 22 -21.9 NP_958702 5' arm      3' arm
26586 - 32152 89 23 -27.4 5' arm      3' arm
26594 - 34117 87 20 -24.9 NP_958706 5' arm      3' arm
26604 - 36731 90 21.5 -20.7 NP_958711 5' arm      3' arm
26605 - 36860 87 22 -22.6 NP_958711 5' arm      3' arm
26597 - 35173 89 23 -20.2 NP_958707 5' arm      3' arm
26615 - 39510 90 19.5 -20.7 NP_958715 5' arm      3' arm
26611 - 38127 83 20.5 -26.6 NP_958711 5' arm      3' arm
26616 - 39959 87 21 -23.4 NP_958716 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.