miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26617 - 40167 90 24.5 -33.4 NP_958716 5' arm      3' arm
26602 - 36029 90 19.5 -20 NP_958709 5' arm      3' arm
26594 - 34117 87 20 -24.9 NP_958706 5' arm      3' arm
26596 - 34960 88 23 -23.2 NP_958707 5' arm      3' arm
26610 - 37991 90 20 -23.7 NP_958711 5' arm      3' arm
26580 - 29578 90 22.5 -19.5 NP_958698 5' arm      3' arm
26593 - 34025 89 19 -25.9 NP_958706 5' arm      3' arm
26623 - 42322 87 20.5 -27.5 NP_958719 5' arm      3' arm
26592 - 33832 89 22 -29.2 NP_958706 5' arm      3' arm
26605 - 36860 87 22 -22.6 NP_958711 5' arm      3' arm
26618 - 40615 89 21 -22.2 NP_958716 5' arm      3' arm
26619 - 40762 89 21 -24.9 NP_958716 5' arm      3' arm
26582 - 30335 88 22 -22.5 NP_958699 5' arm      3' arm
26585 - 31853 85 22 -24.3 5' arm      3' arm
26601 - 35934 90 20 -20.5 NP_958709 5' arm      3' arm
26598 - 35535 90 25.5 -22.4 NP_958708 5' arm      3' arm
26622 - 42124 90 19.5 -27.7 NP_958719 5' arm      3' arm
26609 - 37885 86 22 -24.3 NP_958711 5' arm      3' arm
26595 - 34255 87 22.5 -25.5 NP_958707 5' arm      3' arm
26608 - 37416 80 21.5 -34.1 NP_958711 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.