miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22299	-	5140	90	22.5	-36.8			5' arm      3' arm
22354	-	28718	89	22	-33.9	NP_877474		5' arm      3' arm
22339	-	22914	88	19	-32.9	NP_877469		5' arm      3' arm
22355	-	28979	85	21.5	-31.7	NP_877475		5' arm      3' arm
22266	+	25209	80	29.5	-31.6			5' arm      3' arm
22248	+	11538	89	21.5	-31	NP_877458		5' arm      3' arm
22310	-	10492	81	19.5	-31	NP_877456		5' arm      3' arm
22261	+	21645	89	23	-30.9	NP_877469		5' arm      3' arm
22270	+	28541	89	21	-30.9	NP_877474		5' arm      3' arm
22306	-	8502	90	20	-30.8	NP_877454		5' arm      3' arm
22286	+	36337	89	20	-30.7	NP_877478		5' arm      3' arm
22363	-	33673	88	22.5	-30.7	NP_877476		5' arm      3' arm
22245	+	8592	82	21.5	-30.6	NP_877454		5' arm      3' arm
22280	+	33843	86	19.5	-30.6	NP_877476		5' arm      3' arm
22235	+	1664	89	22.5	-30.4			5' arm      3' arm
22348	-	25375	87	21	-30.3	NP_877472		5' arm      3' arm
22362	-	32851	88	20.5	-30.2	NP_877476		5' arm      3' arm
22349	-	25941	79	21.5	-29.7	NP_877473		5' arm      3' arm
22360	-	32505	89	21	-29.7	NP_877476		5' arm      3' arm
22368	-	34706	86	25	-29.4	NP_877476		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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