miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
33300811 NC_005045.1 Bacteriophage phiKMV

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22292 - 1023 90 21.5 -21.9 5' arm      3' arm
22243 + 6431 90 19.5 -22.7 5' arm      3' arm
22242 + 6192 89 19 -27.7 NP_877451 5' arm      3' arm
22246 + 8891 89 19 -25.5 NP_877454 5' arm      3' arm
22247 + 11043 88 22.5 -27.5 NP_877457 5' arm      3' arm
22248 + 11538 89 21.5 -31 NP_877458 5' arm      3' arm
22250 + 11802 89 21.5 -25.9 NP_877458 5' arm      3' arm
22253 + 13016 90 21.5 -22.5 NP_877458 5' arm      3' arm
22255 + 13377 89 21.5 -22.1 NP_877458 5' arm      3' arm
22245 + 8592 82 21.5 -30.6 NP_877454 5' arm      3' arm
22244 + 7837 90 25.5 -28.3 NP_877453 5' arm      3' arm
22241 + 4347 89 19 -23.5 NP_877448 5' arm      3' arm
22235 + 1664 89 22.5 -30.4 5' arm      3' arm
22232 + 193 90 22 -24.2 5' arm      3' arm
22234 + 845 90 21.5 -24.1 5' arm      3' arm
22238 + 3413 87 21.5 -22.2 NP_877445 5' arm      3' arm
22239 + 3827 89 21.5 -20.1 NP_877446 5' arm      3' arm
22240 + 4073 90 20.5 -23.6 NP_877447 5' arm      3' arm
22236 + 3005 89 20 -20.5 NP_877443 5' arm      3' arm
22237 + 3252 89 19 -21.5 NP_877444 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.