miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565766 NC_004680.1 Mycobacteriophage Che8 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18046 + 472 90 20.5 -25.9 NP_817339 5' arm      3' arm
18047 + 627 90 22.5 -29.6 NP_817340 5' arm      3' arm
18048 + 817 89 23 -22.5 5' arm      3' arm
18049 + 1018 88 25 -27.3 NP_817340 5' arm      3' arm
18050 + 1502 89 23.5 -22.4 NP_817340 5' arm      3' arm
18051 + 1611 90 21.5 -22.3 NP_817340 5' arm      3' arm
18052 + 1784 87 23 -21 NP_817340 5' arm      3' arm
18053 + 1917 87 24.5 -25.6 NP_817340 5' arm      3' arm
18054 + 2068 87 20.5 -21.4 NP_817340 5' arm      3' arm
18055 + 2530 90 22.5 -24.7 NP_817341 5' arm      3' arm
18056 + 2666 89 22.5 -22.1 NP_817341 5' arm      3' arm
18057 + 2851 90 19.5 -23.9 NP_817341 5' arm      3' arm
18058 + 2964 90 24 -21.3 NP_817341 5' arm      3' arm
18059 + 3391 88 22.5 -21 NP_817341 5' arm      3' arm
18060 + 3706 85 22.5 -23.5 NP_817342 5' arm      3' arm
18061 + 4233 90 21 -20.04 NP_817342 5' arm      3' arm
18062 + 5252 90 20.5 -26.5 NP_817344 5' arm      3' arm
18063 + 5534 90 20 -21.8 NP_817344 5' arm      3' arm
18064 + 5834 88 20.5 -20.12 5' arm      3' arm
18065 + 6925 81 20.5 -24.4 NP_817347 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.