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GenBank Identifier | RefSeq Acc. | Name |
29565766 | NC_004680.1 | Mycobacteriophage Che8 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
18046 | + | 472 | 90 | 20.5 | -25.9 | NP_817339 | 5' arm 3' arm | ||
18047 | + | 627 | 90 | 22.5 | -29.6 | NP_817340 | 5' arm 3' arm | ||
18048 | + | 817 | 89 | 23 | -22.5 | 5' arm 3' arm | |||
18049 | + | 1018 | 88 | 25 | -27.3 | NP_817340 | 5' arm 3' arm | ||
18050 | + | 1502 | 89 | 23.5 | -22.4 | NP_817340 | 5' arm 3' arm | ||
18051 | + | 1611 | 90 | 21.5 | -22.3 | NP_817340 | 5' arm 3' arm | ||
18052 | + | 1784 | 87 | 23 | -21 | NP_817340 | 5' arm 3' arm | ||
18053 | + | 1917 | 87 | 24.5 | -25.6 | NP_817340 | 5' arm 3' arm | ||
18054 | + | 2068 | 87 | 20.5 | -21.4 | NP_817340 | 5' arm 3' arm | ||
18055 | + | 2530 | 90 | 22.5 | -24.7 | NP_817341 | 5' arm 3' arm | ||
18056 | + | 2666 | 89 | 22.5 | -22.1 | NP_817341 | 5' arm 3' arm | ||
18057 | + | 2851 | 90 | 19.5 | -23.9 | NP_817341 | 5' arm 3' arm | ||
18058 | + | 2964 | 90 | 24 | -21.3 | NP_817341 | 5' arm 3' arm | ||
18059 | + | 3391 | 88 | 22.5 | -21 | NP_817341 | 5' arm 3' arm | ||
18060 | + | 3706 | 85 | 22.5 | -23.5 | NP_817342 | 5' arm 3' arm | ||
18061 | + | 4233 | 90 | 21 | -20.04 | NP_817342 | 5' arm 3' arm | ||
18062 | + | 5252 | 90 | 20.5 | -26.5 | NP_817344 | 5' arm 3' arm | ||
18063 | + | 5534 | 90 | 20 | -21.8 | NP_817344 | 5' arm 3' arm | ||
18064 | + | 5834 | 88 | 20.5 | -20.12 | 5' arm 3' arm | |||
18065 | + | 6925 | 81 | 20.5 | -24.4 | NP_817347 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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