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| GenBank Identifier | RefSeq Acc. | Name |
| 29566193 | NC_004684.1 | Mycobacteriophage Rosebush virion |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19119 | + | 67121 | 90 | 24.5 | -31.1 | NP_817851 | 5' arm 3' arm | ||
| 19118 | + | 66660 | 90 | 21 | -24 | NP_817851 | 5' arm 3' arm | ||
| 19262 | - | 67294 | 88 | 19 | -20.3 | NP_817851 | 5' arm 3' arm | ||
| 19261 | - | 67118 | 88 | 22.5 | -32.2 | NP_817851 | 5' arm 3' arm | ||
| 19117 | + | 65534 | 89 | 22.5 | -20.7 | NP_817847 | 5' arm 3' arm | ||
| 19260 | - | 65353 | 85 | 19.5 | -26.3 | NP_817846 | 5' arm 3' arm | ||
| 19116 | + | 65128 | 90 | 22 | -21.7 | NP_817845 | 5' arm 3' arm | ||
| 19113 | + | 64126 | 88 | 20.5 | -24.9 | NP_817844 | 5' arm 3' arm | ||
| 19259 | - | 64603 | 90 | 20 | -24.5 | NP_817844 | 5' arm 3' arm | ||
| 19115 | + | 64812 | 85 | 22.5 | -28 | NP_817844 | 5' arm 3' arm | ||
| 19114 | + | 64598 | 88 | 25 | -33.6 | NP_817844 | 5' arm 3' arm | ||
| 19258 | - | 64370 | 89 | 20.5 | -20.9 | NP_817844 | 5' arm 3' arm | ||
| 19112 | + | 63952 | 90 | 21.5 | -32.5 | NP_817844 | 5' arm 3' arm | ||
| 19111 | + | 63861 | 85 | 28 | -26.2 | NP_817844 | 5' arm 3' arm | ||
| 19257 | - | 64203 | 88 | 19 | -22 | NP_817844 | 5' arm 3' arm | ||
| 19110 | + | 63746 | 89 | 23.5 | -31.7 | NP_817843 | 5' arm 3' arm | ||
| 19109 | + | 63632 | 87 | 20 | -23 | NP_817843 | 5' arm 3' arm | ||
| 19108 | + | 62607 | 90 | 20 | -23.3 | NP_817841 | 5' arm 3' arm | ||
| 19107 | + | 62139 | 90 | 20 | -20.4 | NP_817840 | 5' arm 3' arm | ||
| 19106 | + | 61833 | 90 | 19 | -26.2 | NP_817838 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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