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| GenBank Identifier | RefSeq Acc. | Name |
| 29566193 | NC_004684.1 | Mycobacteriophage Rosebush virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19027 | + | 29778 | 84 | 19.5 | -20.8 | NP_817792 | 5' arm 3' arm | ||
| 19221 | - | 42920 | 90 | 19.5 | -20.8 | NP_817808 | 5' arm 3' arm | ||
| 19042 | + | 37706 | 90 | 20 | -20.8 | NP_817800 | 5' arm 3' arm | ||
| 19193 | - | 33102 | 87 | 23.5 | -20.9 | NP_817794 | 5' arm 3' arm | ||
| 19258 | - | 64370 | 89 | 20.5 | -20.9 | NP_817844 | 5' arm 3' arm | ||
| 19136 | - | 9083 | 88 | 19.5 | -20.9 | NP_817773 | 5' arm 3' arm | ||
| 19192 | - | 33015 | 80 | 19.5 | -20.9 | NP_817794 | 5' arm 3' arm | ||
| 19154 | - | 17806 | 89 | 20 | -21 | NP_817782 | 5' arm 3' arm | ||
| 19061 | + | 45095 | 89 | 21.5 | -21.1 | NP_817811 | 5' arm 3' arm | ||
| 19177 | - | 26168 | 90 | 21 | -21.1 | NP_817790 | 5' arm 3' arm | ||
| 19244 | - | 57587 | 88 | 20 | -21.2 | NP_817828 | 5' arm 3' arm | ||
| 19190 | - | 32600 | 88 | 19.5 | -21.2 | NP_817793 | 5' arm 3' arm | ||
| 19247 | - | 58161 | 87 | 20.5 | -21.2 | NP_817829 | 5' arm 3' arm | ||
| 19232 | - | 50369 | 90 | 19 | -21.2 | NP_817815 | 5' arm 3' arm | ||
| 19134 | - | 7188 | 90 | 24.5 | -21.2 | NP_817770 | 5' arm 3' arm | ||
| 18980 | + | 3496 | 88 | 23 | -21.2 | NP_817766 | 5' arm 3' arm | ||
| 18983 | + | 6224 | 87 | 21.5 | -21.3 | NP_817769 | 5' arm 3' arm | ||
| 19172 | - | 24760 | 86 | 20.5 | -21.3 | NP_817790 | 5' arm 3' arm | ||
| 19033 | + | 31314 | 83 | 21 | -21.3 | NP_817793 | 5' arm 3' arm | ||
| 19025 | + | 28691 | 90 | 23.5 | -21.3 | NP_817791 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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