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| GenBank Identifier | RefSeq Acc. | Name |
| 29566193 | NC_004684.1 | Mycobacteriophage Rosebush virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19022 | + | 28121 | 89 | 20.5 | -28.1 | NP_817791 | 5' arm 3' arm | ||
| 19129 | - | 5154 | 90 | 20.5 | -28.1 | NP_817768 | 5' arm 3' arm | ||
| 19185 | - | 31205 | 90 | 22 | -28 | NP_817793 | 5' arm 3' arm | ||
| 19115 | + | 64812 | 85 | 22.5 | -28 | NP_817844 | 5' arm 3' arm | ||
| 19179 | - | 27521 | 86 | 21 | -27.9 | NP_817790 | 5' arm 3' arm | ||
| 19085 | + | 53065 | 87 | 22 | -27.9 | NP_817819 | 5' arm 3' arm | ||
| 19223 | - | 44092 | 86 | 22 | -27.8 | NP_817810 | 5' arm 3' arm | ||
| 19036 | + | 32668 | 89 | 21.5 | -27.8 | NP_817793 | 5' arm 3' arm | ||
| 19181 | - | 29514 | 88 | 23 | -27.8 | NP_817792 | 5' arm 3' arm | ||
| 19199 | - | 34904 | 84 | 20.5 | -27.7 | NP_817797 | 5' arm 3' arm | ||
| 19224 | - | 44605 | 90 | 19 | -27.7 | NP_817810 | 5' arm 3' arm | ||
| 19002 | + | 16484 | 81 | 20.5 | -27.6 | NP_817779 | 5' arm 3' arm | ||
| 19191 | - | 32758 | 90 | 22.5 | -27.4 | NP_817793 | 5' arm 3' arm | ||
| 19102 | + | 59007 | 85 | 20.5 | -27.4 | NP_817830 | 5' arm 3' arm | ||
| 19214 | - | 39548 | 87 | 20 | -27.3 | NP_817804 | 5' arm 3' arm | ||
| 19174 | - | 25338 | 90 | 21 | -27.2 | NP_817790 | 5' arm 3' arm | ||
| 19157 | - | 18740 | 89 | 23 | -27.2 | NP_817782 | 5' arm 3' arm | ||
| 19166 | - | 23184 | 90 | 21.5 | -27.2 | NP_817790 | 5' arm 3' arm | ||
| 19084 | + | 52869 | 89 | 20 | -27.1 | NP_817818 | 5' arm 3' arm | ||
| 18982 | + | 6116 | 89 | 23 | -27.1 | NP_817769 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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