miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566284 NC_004685.1 Mycobacteriophage Corndog virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19263 + 76 87 19 -20.5 5' arm      3' arm
19264 + 220 87 19.5 -19.7 NP_817852 5' arm      3' arm
19265 + 427 89 24.5 -27.7 NP_817853 5' arm      3' arm
19266 + 1071 87 23.5 -24.7 NP_817856 5' arm      3' arm
19267 + 1278 90 21 -22.4 NP_817856 5' arm      3' arm
19268 + 1383 86 20 -23.2 5' arm      3' arm
19269 + 1508 90 20 -25.1 NP_817856 5' arm      3' arm
19270 + 1842 90 23.5 -28.7 NP_817857 5' arm      3' arm
19271 + 2540 90 25 -23.21 NP_817859 5' arm      3' arm
19272 + 2648 87 20.5 -20.8 NP_817859 5' arm      3' arm
19273 + 3101 87 21.5 -26.4 NP_817861 5' arm      3' arm
19274 + 3321 87 21.5 -28.6 NP_817862 5' arm      3' arm
19275 + 3413 88 22.5 -22.3 NP_817862 5' arm      3' arm
19276 + 4103 88 19 -20.6 NP_817863 5' arm      3' arm
19277 + 4191 85 21.5 -21.1 NP_817863 5' arm      3' arm
19278 + 4310 89 22 -20.3 NP_817863 5' arm      3' arm
19279 + 4554 90 22 -25.6 5' arm      3' arm
19280 + 4759 89 19.5 -27.5 5' arm      3' arm
19281 + 5632 85 19.5 -20.5 NP_817866 5' arm      3' arm
19282 + 6632 89 19 -24.6 NP_817868 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.