miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19554 + 122 89 23 -26.9 NP_817974 5' arm      3' arm
19555 + 597 90 21.5 -23.6 NP_817975 5' arm      3' arm
19556 + 1319 90 22.5 -22 NP_817976 5' arm      3' arm
19557 + 2361 86 22 -26.7 NP_817977 5' arm      3' arm
19558 + 2779 90 22 -29.7 NP_817977 5' arm      3' arm
19559 + 3009 89 19 -21 NP_817977 5' arm      3' arm
19560 + 3257 90 20.5 -25.8 NP_817977 5' arm      3' arm
19561 + 3399 87 21.5 -20.7 NP_817977 5' arm      3' arm
19562 + 4560 90 20 -23.1 NP_817979 5' arm      3' arm
19563 + 6341 89 22 -19.5 NP_817982 5' arm      3' arm
19564 + 6969 90 19 -23.8 NP_817985 5' arm      3' arm
19565 + 7100 89 20.5 -35.4 NP_817985 5' arm      3' arm
19566 + 8418 90 20 -27.2 NP_817988 5' arm      3' arm
19567 + 8750 88 21.5 -23.7 NP_817988 5' arm      3' arm
19568 + 8840 90 19.5 -28.4 NP_817988 5' arm      3' arm
19569 + 9293 88 22 -22.1 NP_817990 5' arm      3' arm
19570 + 9956 83 19.5 -19.9 NP_817990 5' arm      3' arm
19571 + 10371 90 22.5 -22.5 NP_817990 5' arm      3' arm
19572 + 10485 90 21 -20.3 NP_817990 5' arm      3' arm
19573 + 11136 90 24.5 -32 NP_817990 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.